Yes, reimporting via sync would be much more accurate terminology. I’m using the Dropbox option (assuming that’s what you mean by method).
Both desktop Macs I’m syncing to show this problem, but, with different outcomes (as in, the incorrectly placed folders on Computer B are different than Computer C).
I also have an iPad syncing. It shows up correctly (i.e., matching Computer A) there.
Here’s a screenshot of the third computer:
